These diamonds exist for various reasons. Many people will pay more attention to the carat weight of the diamond even though it is not the most important thing, we explain it in our guide on the carat, here. But this craze for carat weight does not decrease so prices increase significantly for a larger carat than for a better cut. Thus, quite a few lapidaries will prefer to keep weight on the stone rather than cut it in ideal proportions which will certainly make it lose carat weight.
And for this weight preservation, the cutters will produce a deeply cut gem but you now know that this will have an impact on the brilliance of the diamond. But if these craftsmen do this, it will increase the carat weight and consequently the price.
Another obvious reason that forces lapidaries to cut the diamond differently is the presence of inclusions. Inclusions can be more or less large, so the cutters will cut the inclusion and this sometimes results in not having the best possible cut, but favoring purity.